Computational analysis


We have protocols for using SPADE (matlab), tSNE/viSNE (FlowJo 10.2, matlab/Cyt). We are also in the process of uploading protocols for PhenogGraph (R) and FlowSOM (R), among other tools. For non-registered users, you can request access to these protocols at this link. For registered users, click here:

Additionally, a number of helpful scripts can be found at:

For more complex analysis, users may engage one of the team to assist them with data analysis, or have one of the team perform analysis for them at cost (rates available here, under 'Operator Assistance'). For more information, please email