We have protocols for using SPADE (matlab), tSNE/viSNE (FlowJo 10.2, matlab/Cyt). We are also in the process of uploading protocols for PhenogGraph (R) and FlowSOM (R), among other tools.
For non-registered users, you can request access to these protocols at this link. For registered users, click here:
Additionally, a number of helpful R scripts can be found at: www.github.com/sydneycytometry.
Instructions and tutorials of many of these scripts can be found here:
Training and assistance
We provide training in advanced data analysis, which registered users can request at the following link. Additionally, an introduction to using R and RStudio can be found at this link.