Computational analysis

Data.png

Protocols

We have protocols for using SPADE (matlab), tSNE/viSNE (FlowJo 10.2, matlab/Cyt). We are also in the process of uploading protocols for PhenogGraph (R) and FlowSOM (R), among other tools. 

For non-registered users, you can request access to these protocols at this link. For registered users, click here:

 

Scripts

Additionally, a number of helpful R scripts can be found at: www.github.com/sydneycytometry.

Instructions and tutorials of many of these scripts can be found here:

 

Training and assistance

We provide training in advanced data analysis, which registered users can request at the following link. Additionally, an introduction to using R and RStudio can be found at this link.

Users may engage one of the team to assist them with data analysis, or have one of the team perform analysis for them at cost (rates available here, under 'Operator Assistance').

For more information, please email info@sydneycytometry.org.au