Computational analysis

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Protocols

We have protocols for using SPADE (matlab), tSNE/viSNE (FlowJo 10.2, matlab/Cyt). We are also in the process of uploading protocols for PhenogGraph (R) and FlowSOM (R), among other tools. 

For users registered on PPMS, click here:

For users NOT registered on PPMS, use the form below.

 

Protocols for non-PPMS users:

To gain access to our analysis protocols, please fill in your details here. These are only used for our internal reporting and won’t be used for marketing or other purposes. We may email you from time to time if substantial updates to the protocols are made.

 
 
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Scripts

Additionally, a number of helpful R scripts can be found at: www.github.com/sydneycytometry.

Instructions and tutorials of many of these scripts can be found here:

 

Training and assistance

We provide training in advanced data analysis, which registered users can request at the following link. Additionally, an introduction to using R and RStudio can be found at this link.

Users may engage one of the team to assist them with data analysis, or have one of the team perform analysis for them at cost (rates available here, under 'Operator Assistance').

For more information, please email info@sydneycytometry.org.au